RAPD Markers Distinguish Ground Beetle Species Using Genetic Polymorphism


  • (1)  Ashwak T. Humadi            Biology Department, Collage of Education for Pure Sciences, University of Diyala  
            Iraq

  • (2) * Ammar Ahmed Sultan            Biology Department, Collage of Education for Pure Sciences, University of Diyala  
            Iraq

  • (3)  Shifaa Walee Khaled            Biology Department, Collage of Education for Pure Sciences, University of Diyala  
            Iraq

    (*) Corresponding Author

Abstract

This study focuses on differentiating between two ground beetle species, Oryctes rhinoceros and Allomyrina dichotoma, using RAPD markers due to the limitations of phenotypic methods. Ten RAPD primers were employed to identify polymorphic markers. Results showed a total of 41 polymorphic bands, with primers OP-C06 and OP-C15 displaying significant variation in polymorphism percentages, 100% and 16.7% respectively. Primer OP-A08 demonstrated the highest efficiency rate (17.07%) and effectively distinguished between the two beetle species, unlike primers OP-B09, OP-B14, and OP-C10, which showed zero polymorphism. This study underscores the utility of RAPD markers, particularly OP-A08, in accurately identifying insect species, thereby advancing genetic classification techniques.

Highlights:

  • Effective Distinction: OP-A08 distinguished Oryctes rhinoceros and Allomyrina dichotoma.
  • High Efficiency: OP-A08 had the highest efficiency rate at 17.07%.
  • Reliable Classification: RAPD markers outperform phenotypic methods for insect identification.

Keywords: RAPD Markers, Genetic Polymorphism, Ground Beetles, Insect Classification, Molecular Genetics

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References

M. Kesdek, "A Contribution to the Knowledge of the Carabidae (Coleoptera) Fauna of Turkey," Acta Biologica Universitatis Daugavpiliensis, vol. 12, no. 1, pp. 55-62, 2012.

F. Cassola, "Studies of Tiger Beetles. CLXXXV. New Records from Pakistan (Coleoptera: Cicindelidae)," Animma.X, vol. 31, p. 110, 2010.

R. S. Prosser, J. C. Anderson, M. L. Hanson, K. R. Solomon, and P. K. Sibley, "Indirect Effects of Herbicides on Biota in Terrestrial Edge-of-Field Habitats: A Critical Review of the Literature," Agriculture, Ecosystems & Environment, vol. 232, pp. 59-72, 2016, doi: 10.1016/j.agee.2016.07.009. DOI: https://doi.org/10.1016/j.agee.2016.07.009

A. Atamehr, "Ground Beetles (Coleoptera: Carabidae) of Azarbaijan, Iran," Turkish Journal of Zoology, vol. 37, pp. 188-194, 2013. DOI: https://doi.org/10.3906/zoo-1206-32

H. Namaghi, "Studies on Species Composition of Carabid Beetles in North Eastern Provinces of Iran (Coleoptera: Carabidae)," Munis Entomology and Zoology Journal, vol. 6, no. 1, pp. 268-275, 2011.

F. Shearin, S. C. Reberg-Horton, and E. R. Gallandt, "Cover Crop Effects on the Activity-Density of the Weed Seed Predator Harpalus Rufipes (Coleoptera: Carabidae)," Weed Science, vol. 56, no. 3, pp. 442-450, 2008. DOI: https://doi.org/10.1614/WS-07-137.1

P. Ramachandran, C. Kurien, and J. Mathew, "Assessment of Damage to Coconut Due to Oryctes Rhinoceros L.: Nature and Damage Caused by the Beetle and Factors Involved in the Estimation of Loss," Indian Coconut Journal, vol. 17, pp. 3-12, 1963.

A. Linnaeus, Mantissa Plantarum Altera Generum Editionis VI. et Specierum Editionis II., Laurentii Salvii, 1771, pp. 144-588.

P. R. Nair, A. S. Sukumaran, Murali, and C. Mohan, "Rhinoceros Beetle (Oryctes Rhinoceros L.) and Its Bio Control Agents," Technical Bulletin No. 43, Central Plantation Crops Research Institute, Kayamkulam, Kerala, India, 2002.

N. Adachi, "A New Subspecies of Trypoxylus Dichotomus (Linnaeus, 1771) (Coleoptera, Scarabaeidae, Dynastinae) from Yakushima Island and Tanegashima Island, Kagoshima Prefecture, Japan," Kogane, vol. 20, pp. 11-16, 2017.

M. Y. Chung, Y. I. Yoon, J. S. Hwang, T. W. Goo, and E. Y. Yun, "Antiobesity Effect of Allomyrina Dichotoma (Arthropoda: Insecta) Larvae Ethanol Extract on 3T3-L1 Adipocyte Differentiation," Entomological Research, vol. 44, pp. 9-16, 2014, doi: 10.1111/1748-5967.12044. DOI: https://doi.org/10.1111/1748-5967.12044

Z. Kui, J. F. Chen, and Y. X. Cai, "Cultivation of Medicinal Insect of Japanese Rhinoceros Beetles," Zhong Cao Yao, vol. 31, pp. 633-634, 2000.

N. A. Ratcliffe, C. B. Mello, E. S. Garcia, T. M. Butt, and P. Azambuja, "Insect Natural Products and Processes: New Treatments for Human Disease," Insect Biochemistry and Molecular Biology, vol. 41, pp. 747-769, 2011, doi: 10.1016/j.ibmb.2011.05.007. DOI: https://doi.org/10.1016/j.ibmb.2011.05.007

G. E. Fox, E. Stackebrandt, R. B. Hespell, et al., "The Phylogeny of Prokaryotes," Science, vol. 209, pp. 457-463, 1980. DOI: https://doi.org/10.1126/science.6771870

V. Brygadyrenk and D. Reshetniak, "Morphometric Variability of Clitelloceohalus Ophoni (Eugregarinid, Gregarinidae) in the Intestines of Harpalus Rufipes (Coleoptera, Carabidae)," Archives of Biological Sciences, vol. 68, no. 3, pp. 587-601, 2016. DOI: https://doi.org/10.2298/ABS150923049B

M. Blaxter, "Counting Angels with DNA," Nature, vol. 421, p. 122-124, 2003. DOI: https://doi.org/10.1038/421122a

M. Vences, M. Thomas, R. M. Bonett, and D. R. Vieites, "Deciphering Amphibian Diversity Through DNA Barcoding: Chances and Challenges," Philosophical Transactions of the Royal Society, vol. 360, pp. 1859-1868, 2005. DOI: https://doi.org/10.1098/rstb.2005.1717

M. N. Miller, "Tools for Population Genetic Analysis (TFPGA)," in Genetic Variability in Natural Populations, S. Narang, Ed. Experientia, vol. 36, pp. 50-51, 1980. DOI: https://doi.org/10.1007/BF02003964

M. Nei, "Genetic Distance Between Populations," American Naturalist, vol. 106, pp. 283-292, 1972. DOI: https://doi.org/10.1086/282771

A. J. Al-Karawi and A. A. Sultan, "Molecular Classification for Some Species of Ground Beetles to the Carabidae Family Spread in Diyala Governorate," Texas Journal of Agriculture and Biological Sciences, vol. 5, pp. 43-53, 2022.

S. S. Hamad, "Molecular Genetic Study and Gene Expression of Cytochrome P450 Between Tribolium Castaneum and Tribolium Confusum Responsible for Different Pesticides," M.S. thesis, College of Education for Pure Sciences, University of Diyala, Iraq, 2022.

S. R. Skoda, J. L. Figarola, S. Pornkulwat, and J. E. Foster, "Inter- and Intra-Specific Identification of the Screwworm, Cochliomyia Hominivorax, Using Random Amplified Polymorphic DNA-Polymerase Chain Reaction," Journal of Insect Science, vol. 13, no. 76, pp. 1-15, 2013. DOI: https://doi.org/10.1673/031.013.7601

J. G. K. Williams, A. R. Kubelik, K. J. Livak, J. A. Rafalski, and S. V. Tingey, "DNA Polymorphisms Amplified by Arbitrary Primers are Useful as Genetic Markers," Nucleic Acids Research, vol. 18, pp. 6531-6535, 1990. DOI: https://doi.org/10.1093/nar/18.22.6531

K. P. Williams and D. P. Bartel, "PCR Product with Strands of Unequal Length," Nucleic Acids Research, vol. 23, no. 20, pp. 4220-4221, 1995. DOI: https://doi.org/10.1093/nar/23.20.4220

A. Sultan, "Comparative Molecular Study Between Two Species of Flour Beetle Tribolium Castaneum and Tribolium Confusum by Using RAPD-PCR," Systematic Reviews in Pharmacy, vol. 11, no. 12, pp. 1604-1609, 2020.

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Published
2024-05-27
 
How to Cite
[1]
A. T. Humadi, A. A. Sultan, and S. W. Khaled, “RAPD Markers Distinguish Ground Beetle Species Using Genetic Polymorphism”, PELS, vol. 5, pp. 717-729, May 2024.
Section
Agricultural Product Technology